Galaxy Tutorial for Bioinformatics Variant Calling with BCFTOOLS - YouTube
PDF) How to extract and filter SNP data from the genotyping-by- sequencing (GBS) data in vcf format using bcftools
The evaluation of Bcftools mpileup and GATK HaplotypeCaller for variant calling in non-human species | Scientific Reports
Filtering of VCF Files
7. Variant calling — Genomics Tutorial 2020.2.0 documentation
A simple SNP calling pipeline
User friendly (visual&interactive) VCF/BCF mining tools (2021)
Filtering vcf using bcftools filter-Expression Question · Issue #1224 · samtools/bcftools · GitHub
IJMS | Free Full-Text | Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing
Filtering of VCF Files
Protocol for unbiased, consolidated variant calling from whole exome sequencing data - ScienceDirect
Handling sam and vcf data, quality control
Mapping Summary and Extension
Filtering of VCF Files
SNP/Variant Calling Tutorial
Filtering vcf using bcftools filter-Expression Question · Issue #1224 · samtools/bcftools · GitHub
bcftools filter -e 'GT="het"' recognize GT 2/2 as heterozygous · Issue #1268 · samtools/bcftools · GitHub
Cells | Free Full-Text | A Next Generation Sequencing-Based Protocol for Screening of Variants of Concern in Autism Spectrum Disorder
bcftools filter | Filtering variants using the FILTER field - YouTube
Add Filter per sample · Issue #1226 · samtools/bcftools · GitHub
No unexpected CRISPR-Cas9 off-target activity revealed by trio sequencing of gene-edited mice | PLOS Genetics
vcf_filter.py: VCF Filter Function — PPP 0.1.13 documentation
Biology | Free Full-Text | A Map of 3′ DNA Transduction Variants Mediated by Non-LTR Retroelements on 3202 Human Genomes
bcftools filter on per-sample FORMAT fields · Issue #1010 · samtools/ bcftools · GitHub
